Publications - Published papers

Please find below publications of our group. Currently, we list 53 papers. Some of the publications are in collaboration with the group of Peter Stadler and are also listed in the publication list for his group. Access to published papers (access) is restricted to our local network and chosen collaborators.
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©NOTICE: All papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

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Publications of the Computational EvoDevo group 2010

The 10kTrees Website: A New Online Resource for Primate Phylogeny

Arnold, C., Matthews, L. J., Nunn, C. L.
Evolutionary Anthropology 19:114-118
PREPRINT 10-076: [ Abstract ]  [ PDF ]   paperID

Phylogenetic Targeting of Research Effort in Evolutionary Biology

Arnold, C., Nunn, C. L.
American Naturalist 176:601-612
PREPRINT 10-075: [ Abstract ]  [ PDF ]   paperID

Simulating Trait Evolution for Cross-Cultural Comparison

Nunn, C. L., Arnold, C., Matthews, L. & Borgerhoff Mulder, M
Philosophical Transactions of the Royal Society of London B 365:3807-3819
PREPRINT 10-070: [ Abstract ]  [ PDF ]   paperID

Detection of Protein Domains in Eukaryotic Genome Sequences. In: Advances in Bioinformatics and Computational Biology, Carlos E. Ferreira, Satoru Miyano, Peter F. Stadler (eds.), Springer, Heidelberg, Lect. Note.

Arli A. Parikesit, Peter F. Stadler, Sonja J. Prohaska
5th Brazilian Symposium on Bioinformatics, BSB 2010, Rio de Janeiro, Brazil, August 31-September 3, 2010
PREPRINT 10-045:   [ PDF ]   paperID

In Silico Analysis of Hemagglutinin, Neuraminidase, and Matrix2 of H5N1 Virus Indonesian Strain Related to Its High Pathgenicity

Usman Sumo Friend Tambunan, Agus Limanto and Arli Aditya Parikesit
IIOABJ, 2010; Vol.1 (3): 17-24
PREPRINT 10-042:
[ Publishers's page ]

Cracking The Genetic Code of Human Virus by using Open Source Bioinformatics tools

Usman Sumo Friend Tambunan, and Arli Aditya Parikesit
Journal of Fundamental Sciences Vol 6, No 1 (2010). 42-50
PREPRINT 10-041:
[ Publishers's page ]

Quantitative Comparison of Genomic-Wide Protein Domain Distributions

Arli A. Parikesit , Peter F. Stadler & Sonja J. Prohaska
GCB2010 conference proceeding. Vol P-173: pp 93-102
PREPRINT 10-034: [ Abstract ]  [ PDF ]   paperID

Polynomial algorithms for the Maximal Pairing Problem: efficient phylogenetic targeting on arbitrary trees

Christian Arnold, and Peter F. Stadler
Alg. Mol. Biol. 5: 25 (2010)
PREPRINT 10-022: [ Abstract ]  [ PDF ]  [ Software ]   paperID

Innovation in Gene Regulation: The Case of Chromatin Computation

Sonja J. Prohaska, Peter F. Stadler, David C. Krakauer
J.Theor.Biol. 265: 27-44 (2010)
PREPRINT 10-002: [ Abstract ]  [ PDF ]
[ Publishers's page ]  paperID