Publications - Working papers

Please find below working papers of our group. Currently, we list 4 working papers. If you have problems accessing electronic information, please let us know:

©NOTICE: All working papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

EVODEVO 14-001: Comparative Detection of Processed Small RNAs in Archaea

Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, Peter F. Stadler

Download


[ PDF ]  [ Supplement ]

Abstract


Enzymating splicing in Archaeal tRNAs is guided by bulgehelix- bulge structural elements, while much less seems to be known about splicing in other small RNAs. We conduct a genome-wide analysis of several archaeal genomes to identify putative BHB elements and compare our ndings with available RNA-seq data. We also provide an analysis of the viability of using pattern-based and stochastic structural scanning algorithms for in silico studies of the occurance of BHB motifs. Furthermore, we comment on splicing motifs in other small RNAs, which mostly do not t the pattern of bulge-helix-bulge motifs.