Publications - Published papers

Please find below publications of our group. Currently, we list 53 papers. Some of the publications are in collaboration with the group of Peter Stadler and are also listed in the publication list for his group. Access to published papers (access) is restricted to our local network and chosen collaborators.
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©NOTICE: All papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

Evolution of Domain Co-occurrences: Some Striking Results

Arli A. Parikesit, Peter F. Stadler, and Sonja J. Prohaska


PREPRINT 11-019: [ PDF ]


GCB2011 Extended Abstract, Poster Track PT-141


Investigation of the origin and evolution of regulatory mechanisms requires comparable estimates for the abundance and co-occurrence of functional protein domains of distantly related genomes. Currently available methods suffer for strong ascertainment biases, requiring methods for unbiased approaches to protein domain contents at genome-wide scales. We will discuss domain distribution patterns between taxonomic groups providing insights into large-scale evolutionary trends.