Publications - Published papers

Please find below publications of our group. Currently, we list 53 papers. Some of the publications are in collaboration with the group of Peter Stadler and are also listed in the publication list for his group. Access to published papers (access) is restricted to our local network and chosen collaborators.
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©NOTICE: All papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

Comparative Detection of Processed Small RNAs in Archaea

Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, Peter F. Stadler

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Abstract


Enzymating splicing in Archaeal tRNAs is guided by bulgehelix- bulge structural elements, while much less seems to be known about splicing in other small RNAs. We conduct a genome-wide analysis of several archaeal genomes to identify putative BHB elements and compare our ndings with available RNA-seq data. We also provide an analysis of the viability of using pattern-based and stochastic structural scanning algorithms for in silico studies of the occurance of BHB motifs. Furthermore, we comment on splicing motifs in other small RNAs, which mostly do not t the pattern of bulge-helix-bulge motifs.